J3_9EBB_032
3D structure
- PDB id
- 9EBB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the MPY and ribosome-tunnel occluding hibernation factors bound to the Mycobacterium tuberculosis C- 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9EBB_032 not in the Motif Atlas
- Homologous match to J3_8B0X_010
- Geometric discrepancy: 0.071
- The information below is about J3_8B0X_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01343.1
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
9EBB|1|a|C|1054
9EBB|1|a|G|1055
9EBB|1|a|U|1056
9EBB|1|a|C|1057
9EBB|1|a|A|1058
9EBB|1|a|G|1059
*
9EBB|1|a|C|1098
9EBB|1|a|G|1099
9EBB|1|a|C|1100
9EBB|1|a|A|1101
9EBB|1|a|A|1102
9EBB|1|a|C|1103
9EBB|1|a|C|1104
*
9EBB|1|a|G|1179
9EBB|1|a|A|1180
9EBB|1|a|U|1181
9EBB|1|a|G|1182
9EBB|1|a|A|1183
9EBB|1|a|C|1184
9EBB|1|a|G|1185
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain 9
- Small ribosomal subunit protein uS14
- Chain c
- 30S ribosomal protein S3
- Chain e
- 30S ribosomal protein S5
- Chain i
- 30S ribosomal protein S9
- Chain j
- 30S ribosomal protein S10
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