J3_9EC3_015

3D structure

PDB id

9EC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying fMet-tRNA(fMet) and deacylated tRNA at ribosome P and E sites.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.29 Å

Loop

Sequence

UGACG*CC*GAAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9EC3_015 not in the Motif Atlas

Geometric match to J3_9E6Q_013

Geometric discrepancy: 0.2583

The information below is about J3_9E6Q_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.3

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

9EC3|1|I|U|1663
9EC3|1|I|G|1664
9EC3|1|I|A|1665
9EC3|1|I|C|1666
9EC3|1|I|G|1667
*
9EC3|1|I|C|1801
9EC3|1|I|C|1802
*
9EC3|1|I|G|1805
9EC3|1|I|A|1806
9EC3|1|I|A|1807
9EC3|1|I|A|1808
9EC3|1|I|A|1809
9EC3|1|I|G|1810

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2