J3_9EC3_016

3D structure

PDB id

9EC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying fMet-tRNA(fMet) and deacylated tRNA at ribosome P and E sites.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.29 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

9EC3|1|I|A|2435

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9EC3_016 not in the Motif Atlas

Homologous match to J3_8B0X_021

Geometric discrepancy: 0.1213

The information below is about J3_8B0X_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17460.1

Basepair signature

cWW-tHH-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9EC3|1|I|U|2328
9EC3|1|I|U|2329
9EC3|1|I|G|2330
*
9EC3|1|I|C|2433
9EC3|1|I|U|2434
9EC3|1|I|A|2435
9EC3|1|I|A|2436
9EC3|1|I|C|2437
*
9EC3|1|I|G|2461
9EC3|1|I|G|2462
9EC3|1|I|A|2463
9EC3|1|I|C|2464
9EC3|1|I|A|2465
9EC3|1|I|G|2466

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain H

50S ribosomal protein L9

Chain y

Large ribosomal subunit protein bL28