J3_9ED0_002

3D structure

PDB id

9ED0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human LARP1 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGAUUAAG*CGCGC(A2M)AAU*(A2M)GU

Length

20 nucleotides

Bulged bases

9ED0|1|2|A|46

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9ED0_002 not in the Motif Atlas

Geometric match to J3_8P9A_069

Geometric discrepancy: 0.0568

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9ED0|1|2|A|40
9ED0|1|2|G|41
9ED0|1|2|A|42
9ED0|1|2|U|43
9ED0|1|2|U|44
9ED0|1|2|A|45
9ED0|1|2|A|46
9ED0|1|2|G|47
*
9ED0|1|2|C|479
9ED0|1|2|G|480
9ED0|1|2|C|481
9ED0|1|2|G|482
9ED0|1|2|C|483
9ED0|1|2|A2M|484
9ED0|1|2|A|485
9ED0|1|2|A|486
9ED0|1|2|U|487
*
9ED0|1|2|A2M|512
9ED0|1|2|G|513
9ED0|1|2|U|514

Current chains

Chain 2

rRNA

Nearby chains

Chain J

Small ribosomal subunit protein uS4

Chain X

40S ribosomal protein S23