J3_9ED0_008

3D structure

PDB id

9ED0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human LARP1 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUU(A2M)AG

Length

19 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9ED0_008 not in the Motif Atlas

Geometric match to J3_8P9A_076

Geometric discrepancy: 0.1155

The information below is about J3_8P9A_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

9ED0|1|2|C|1218
9ED0|1|2|C|1219
9ED0|1|2|A|1220
9ED0|1|2|G|1221
*
9ED0|1|2|C|1645
9ED0|1|2|C|1646
9ED0|1|2|A|1647
9ED0|1|2|G|1648
9ED0|1|2|U|1649
9ED0|1|2|A|1650
9ED0|1|2|A|1651
*
9ED0|1|2|U|1673
9ED0|1|2|G|1674
9ED0|1|2|A|1675
9ED0|1|2|U|1676
9ED0|1|2|U|1677
9ED0|1|2|A2M|1678
9ED0|1|2|A|1679
9ED0|1|2|G|1680

Current chains

Chain 2

rRNA

Nearby chains

Chain F

Small ribosomal subunit protein uS7

Chain Q

Small ribosomal subunit protein uS9

Chain c

Small ribosomal subunit protein eS28