J3_9ED0_009
3D structure
- PDB id
- 9ED0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human LARP1 bound to the 40S small ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UGGA*UAC*G(7MG)AA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 7MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9ED0_009 not in the Motif Atlas
- Geometric match to J3_4LFB_003
- Geometric discrepancy: 0.0905
- The information below is about J3_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44359.1
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9ED0|1|2|U|1225
9ED0|1|2|G|1226
9ED0|1|2|G|1227
9ED0|1|2|A|1228
*
9ED0|1|2|U|1530
9ED0|1|2|A|1531
9ED0|1|2|C|1532
*
9ED0|1|2|G|1638
9ED0|1|2|7MG|1639
9ED0|1|2|A|1640
9ED0|1|2|A|1641
Current chains
- Chain 2
- rRNA
Nearby chains
- Chain F
- Small ribosomal subunit protein uS7
- Chain Q
- Small ribosomal subunit protein uS9
- Chain S
- Small ribosomal subunit protein uS13
- Chain T
- Small ribosomal subunit protein eS19
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