J3_9ED0_010
3D structure
- PDB id
- 9ED0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human LARP1 bound to the 40S small ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- C(PSU)UAAUU(PSU)*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 9ED0|1|2|G|1256, 9ED0|1|2|A|1258, 9ED0|1|2|A|1260
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9ED0_010 not in the Motif Atlas
- Geometric match to J3_8CRE_080
- Geometric discrepancy: 0.0718
- The information below is about J3_8CRE_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9ED0|1|2|C|1237
9ED0|1|2|PSU|1238
9ED0|1|2|U|1239
9ED0|1|2|A|1240
9ED0|1|2|A|1241
9ED0|1|2|U|1242
9ED0|1|2|U|1243
9ED0|1|2|PSU|1244
*
9ED0|1|2|G|1255
9ED0|1|2|G|1256
9ED0|1|2|G|1257
9ED0|1|2|A|1258
9ED0|1|2|A|1259
9ED0|1|2|A|1260
9ED0|1|2|C|1261
9ED0|1|2|C|1262
9ED0|1|2|U|1263
9ED0|1|2|C|1264
9ED0|1|2|A|1265
9ED0|1|2|C|1266
*
9ED0|1|2|G|1516
9ED0|1|2|G|1517
9ED0|1|2|C|1518
9ED0|1|2|U|1519
9ED0|1|2|G|1520
Current chains
- Chain 2
- rRNA
Nearby chains
- Chain P
- Small ribosomal subunit protein uS19
- Chain S
- Small ribosomal subunit protein uS13
- Chain U
- Small ribosomal subunit protein uS10
- Chain d
- Small ribosomal subunit protein uS14
Coloring options: