J3_9ED0_011

3D structure

PDB id

9ED0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human LARP1 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

(OMC)CGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

9ED0|1|2|G|1274, 9ED0|1|2|G|1507, 9ED0|1|2|U|1509

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9ED0_011 not in the Motif Atlas

Geometric match to J3_8CRE_081

Geometric discrepancy: 0.1009

The information below is about J3_8CRE_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_87797.2

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

3

Unit IDs

9ED0|1|2|OMC|1272
9ED0|1|2|C|1273
9ED0|1|2|G|1274
9ED0|1|2|G|1275
9ED0|1|2|A|1276
9ED0|1|2|C|1277
*
9ED0|1|2|G|1320
9ED0|1|2|G|1321
9ED0|1|2|G|1322
9ED0|1|2|U|1323
9ED0|1|2|G|1324
*
9ED0|1|2|U|1504
9ED0|1|2|U|1505
9ED0|1|2|A|1506
9ED0|1|2|G|1507
9ED0|1|2|A|1508
9ED0|1|2|U|1509
9ED0|1|2|G|1510

Current chains

Chain 2

rRNA

Nearby chains

Chain K

Small ribosomal subunit protein eS10

Chain d

Small ribosomal subunit protein uS14

Chain f

Ubiquitin-ribosomal protein eS31 fusion protein