J3_9ED0_013

3D structure

PDB id

9ED0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human LARP1 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9ED0_013 not in the Motif Atlas

Geometric match to J3_8CRE_083

Geometric discrepancy: 0.0693

The information below is about J3_8CRE_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.4

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

9ED0|1|2|U|1350
9ED0|1|2|G|1351
*
9ED0|1|2|U|1360
9ED0|1|2|G|1361
9ED0|1|2|U|1362
9ED0|1|2|C|1363
*
9ED0|1|2|G|1375
9ED0|1|2|A|1376
9ED0|1|2|U|1377
9ED0|1|2|A|1378
9ED0|1|2|A|1379

Current chains

Chain 2

rRNA

Nearby chains

Chain A

Small ribosomal subunit protein uS2

Chain C

Small ribosomal subunit protein uS5

Chain R

Small ribosomal subunit protein eS17