J3_9ED0_015
3D structure
- PDB id
- 9ED0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human LARP1 bound to the 40S small ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CACUG*CGUGAUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 9ED0|1|2|U|1535, 9ED0|1|2|G|1603
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9ED0_015 not in the Motif Atlas
- Geometric match to J3_8CRE_086
- Geometric discrepancy: 0.1272
- The information below is about J3_8CRE_086
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03192.1
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F
- Number of instances in this motif group
- 5
Unit IDs
9ED0|1|2|C|1532
9ED0|1|2|A|1533
9ED0|1|2|C|1534
9ED0|1|2|U|1535
9ED0|1|2|G|1536
*
9ED0|1|2|C|1597
9ED0|1|2|G|1598
9ED0|1|2|U|1599
9ED0|1|2|G|1600
9ED0|1|2|A|1601
9ED0|1|2|U|1602
9ED0|1|2|G|1603
9ED0|1|2|G|1604
*
9ED0|1|2|C|1635
9ED0|1|2|G|1636
9ED0|1|2|A|1637
9ED0|1|2|G|1638
Current chains
- Chain 2
- rRNA
Nearby chains
- Chain F
- Small ribosomal subunit protein uS7
- Chain S
- Small ribosomal subunit protein uS13
- Chain T
- Small ribosomal subunit protein eS19
- Chain Z
- Small ribosomal subunit protein eS25
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