J3_9EHO_020

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGCUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

9EHO|1|AA|A|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9EHO|1|AA|A|41
9EHO|1|AA|G|42
9EHO|1|AA|C|43
9EHO|1|AA|U|44
9EHO|1|AA|U|45
9EHO|1|AA|A|46
9EHO|1|AA|A|47
9EHO|1|AA|G|48
*
9EHO|1|AA|C|724
9EHO|1|AA|G|725
9EHO|1|AA|C|726
9EHO|1|AA|G|727
9EHO|1|AA|C|728
9EHO|1|AA|A|729
9EHO|1|AA|A|730
9EHO|1|AA|A|731
9EHO|1|AA|U|732
*
9EHO|1|AA|A|757
9EHO|1|AA|G|758
9EHO|1|AA|U|759

Current chains

Chain AA

18S rRNA

Nearby chains

Chain KK

Small ribosomal subunit protein uS4

Chain YY

Small ribosomal subunit protein uS12