J3_9EHO_020
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGCUUAAG*CGCGCAAAU*AGU
- Length
- 20 nucleotides
- Bulged bases
- 9EHO|1|AA|A|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9EHO_020 not in the Motif Atlas
- Homologous match to J3_9PN5_028
- Geometric discrepancy: 0.085
- The information below is about J3_9PN5_028
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_63856.3
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-cWS-tHH-F-cWW-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
9EHO|1|AA|A|41
9EHO|1|AA|G|42
9EHO|1|AA|C|43
9EHO|1|AA|U|44
9EHO|1|AA|U|45
9EHO|1|AA|A|46
9EHO|1|AA|A|47
9EHO|1|AA|G|48
*
9EHO|1|AA|C|724
9EHO|1|AA|G|725
9EHO|1|AA|C|726
9EHO|1|AA|G|727
9EHO|1|AA|C|728
9EHO|1|AA|A|729
9EHO|1|AA|A|730
9EHO|1|AA|A|731
9EHO|1|AA|U|732
*
9EHO|1|AA|A|757
9EHO|1|AA|G|758
9EHO|1|AA|U|759
Current chains
- Chain AA
- 18S rRNA
Nearby chains
- Chain KK
- Small ribosomal subunit protein uS4
- Chain YY
- Small ribosomal subunit protein uS12
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