J3_9F1B_007

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

9F1B|1|A2|G|1275, 9F1B|1|A2|G|1508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9F1B_007 not in the Motif Atlas

Homologous match to J3_4V88_038

Geometric discrepancy: 0.1012

The information below is about J3_4V88_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75993.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

9F1B|1|A2|C|1273
9F1B|1|A2|C|1274
9F1B|1|A2|G|1275
9F1B|1|A2|G|1276
9F1B|1|A2|A|1277
9F1B|1|A2|C|1278
*
9F1B|1|A2|G|1321
9F1B|1|A2|G|1322
9F1B|1|A2|G|1323
9F1B|1|A2|U|1324
9F1B|1|A2|G|1325
*
9F1B|1|A2|U|1505
9F1B|1|A2|U|1506
9F1B|1|A2|A|1507
9F1B|1|A2|G|1508
9F1B|1|A2|A|1509
9F1B|1|A2|U|1510
9F1B|1|A2|G|1511

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AC

Ribosomal protein S27a

Chain AG

40S ribosomal protein S29

Chain Aj

S10_plectin domain-containing protein