J3_9F1B_016

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GAAG*CC(A2M)UAUC*GUC

Length

14 nucleotides

Bulged bases

9F1B|1|B5|U|2631, 9F1B|1|B5|A|2632

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9F1B_016 not in the Motif Atlas

Homologous match to J3_8C3A_007

Geometric discrepancy: 0.0952

The information below is about J3_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_74051.1

Basepair signature

cWW-tSH-tWW-tHW-F-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

9F1B|1|B5|G|2245
9F1B|1|B5|A|2246
9F1B|1|B5|A|2247
9F1B|1|B5|G|2248
*
9F1B|1|B5|C|2628
9F1B|1|B5|C|2629
9F1B|1|B5|A2M|2630
9F1B|1|B5|U|2631
9F1B|1|B5|A|2632
9F1B|1|B5|U|2633
9F1B|1|B5|C|2634
*
9F1B|1|B5|G|2643
9F1B|1|B5|U|2644
9F1B|1|B5|C|2645

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Bg

Large ribosomal subunit protein eL34

Chain Bj

Ribosomal protein L37

Chain Bl

60S ribosomal protein L39-like