3D structure

PDB id
9F1B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E
Experimental method
ELECTRON MICROSCOPY
Resolution
3.01 Å

Loop

Sequence
CUC*GAG*CAAAAG
Length
12 nucleotides
Bulged bases
9F1B|1|B5|A|4026
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9F1B_020 not in the Motif Atlas
Homologous match to J3_5TBW_013
Geometric discrepancy: 0.0963
The information below is about J3_5TBW_013
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_91491.5
Basepair signature
cWW-F-tWW-tHW-cWW-F-cWW
Number of instances in this motif group
7

Unit IDs

9F1B|1|B5|C|3987
9F1B|1|B5|U|3988
9F1B|1|B5|C|3989
*
9F1B|1|B5|G|4013
9F1B|1|B5|A|4014
9F1B|1|B5|G|4015
*
9F1B|1|B5|C|4024
9F1B|1|B5|A|4025
9F1B|1|B5|A|4026
9F1B|1|B5|A|4027
9F1B|1|B5|A|4028
9F1B|1|B5|G|4029

Current chains

Chain B5
28S rRNA

Nearby chains

Chain AT
P-site tRNA
Chain B
Large ribosomal subunit protein uL18
Chain B7
5S ribosomal RNA; 5S rRNA
Chain BJ
60S ribosomal protein L11
Chain BT
60S ribosomal protein L21
Chain Bo
Large ribosomal subunit protein eL42

Coloring options:


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