J3_9F1B_021

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

9F1B|1|B5|A|4210, 9F1B|1|B5|U|4211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9F1B_021 not in the Motif Atlas

Homologous match to J3_5TBW_014

Geometric discrepancy: 0.0889

The information below is about J3_5TBW_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98597.1

Basepair signature

cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

2

Unit IDs

9F1B|1|B5|U|4209
9F1B|1|B5|A|4210
9F1B|1|B5|U|4211
9F1B|1|B5|C|4212
*
9F1B|1|B5|G|4237
9F1B|1|B5|U|4238
9F1B|1|B5|U|4239
*
9F1B|1|B5|A|4253
9F1B|1|B5|C|4254
9F1B|1|B5|U|4255
9F1B|1|B5|A|4256
9F1B|1|B5|A|4257
9F1B|1|B5|U|4258
9F1B|1|B5|A|4259

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BV

Ribosomal protein L23