3D structure

PDB id
9F1B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E
Experimental method
ELECTRON MICROSCOPY
Resolution
3.01 Å

Loop

Sequence
UAUC*GUU*ACUAAUA
Length
14 nucleotides
Bulged bases
9F1B|1|B5|A|4210, 9F1B|1|B5|U|4211
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9F1B_021 not in the Motif Atlas
Homologous match to J3_5TBW_014
Geometric discrepancy: 0.0889
The information below is about J3_5TBW_014
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_98597.1
Basepair signature
cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW
Number of instances in this motif group
2

Unit IDs

9F1B|1|B5|U|4209
9F1B|1|B5|A|4210
9F1B|1|B5|U|4211
9F1B|1|B5|C|4212
*
9F1B|1|B5|G|4237
9F1B|1|B5|U|4238
9F1B|1|B5|U|4239
*
9F1B|1|B5|A|4253
9F1B|1|B5|C|4254
9F1B|1|B5|U|4255
9F1B|1|B5|A|4256
9F1B|1|B5|A|4257
9F1B|1|B5|U|4258
9F1B|1|B5|A|4259

Current chains

Chain B5
28S rRNA

Nearby chains

Chain BB
Ribosomal protein L3
Chain BV
Ribosomal protein L23

Coloring options:


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