J3_9F1B_039

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

UG*CGACC*GA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9F1B_039 not in the Motif Atlas

Homologous match to J3_8C3A_054

Geometric discrepancy: 0.2818

The information below is about J3_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16991.1

Basepair signature

cWW-F-cWW-F-F-cWW

Number of instances in this motif group

3

Unit IDs

9F1B|1|B5|U|2418
9F1B|1|B5|G|2419
*
9F1B|1|B5|C|2428
9F1B|1|B5|G|2429
9F1B|1|B5|A|2430
9F1B|1|B5|C|2431
9F1B|1|B5|C|2432
*
9F1B|1|B5|G|2599
9F1B|1|B5|A|2600

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BZ

60S ribosomal protein L27

Chain Bg

Large ribosomal subunit protein eL34