3D structure

PDB id
9F1B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E
Experimental method
ELECTRON MICROSCOPY
Resolution
3.01 Å

Loop

Sequence
AC*GAGAAUU*ACACU
Length
14 nucleotides
Bulged bases
9F1B|1|B8|A|62
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9F1B_045 not in the Motif Atlas
Homologous match to J3_8C3A_060
Geometric discrepancy: 0.1709
The information below is about J3_8C3A_060
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_38265.2
Basepair signature
cWW-F-cWW-F-cWW-F-cWW-F
Number of instances in this motif group
8

Unit IDs

9F1B|1|B8|A|44
9F1B|1|B8|C|45
*
9F1B|1|B8|G|58
9F1B|1|B8|A|59
9F1B|1|B8|G|60
9F1B|1|B8|A|61
9F1B|1|B8|A|62
9F1B|1|B8|U|63
9F1B|1|B8|U|64
*
9F1B|1|B8|A|95
9F1B|1|B8|C|96
9F1B|1|B8|A|97
9F1B|1|B8|C|98
9F1B|1|B8|U|99

Current chains

Chain B8
5.8S rRNA

Nearby chains

Chain B5
Large subunit ribosomal RNA; LSU rRNA
Chain BX
Large ribosomal subunit protein uL23
Chain Bh
60S ribosomal protein L35
Chain Bj
Ribosomal protein L37
Chain Bl
60S ribosomal protein L39-like

Coloring options:


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