J3_9F1C_001

3D structure

PDB id

9F1C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.78 Å

Loop

Sequence

AGAG*CAG*CUGGAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9F1C_001 not in the Motif Atlas

Homologous match to J3_4V88_032

Geometric discrepancy: 0.1942

The information below is about J3_4V88_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_54972.1

Basepair signature

cWW-tWW-F-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

9F1C|1|A2|A|817
9F1C|1|A2|G|818
9F1C|1|A2|A|819
9F1C|1|A2|G|820
*
9F1C|1|A2|C|830
9F1C|1|A2|A|831
9F1C|1|A2|G|832
*
9F1C|1|A2|C|844
9F1C|1|A2|U|845
9F1C|1|A2|G|846
9F1C|1|A2|G|847
9F1C|1|A2|A|848
9F1C|1|A2|U|849

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ad

40S ribosomal protein S4

Chain Ai

40S ribosomal protein S9

Chain Ax

40S ribosomal protein S24