J3_9F1C_021

3D structure

PDB id

9F1C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.78 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

9F1C|1|B5|A|4210, 9F1C|1|B5|U|4211, 9F1C|1|B5|A|4256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9F1C_021 not in the Motif Atlas

Homologous match to J3_8C3A_011

Geometric discrepancy: 0.1146

The information below is about J3_8C3A_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98597.1

Basepair signature

cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

2

Unit IDs

9F1C|1|B5|U|4209
9F1C|1|B5|A|4210
9F1C|1|B5|U|4211
9F1C|1|B5|C|4212
*
9F1C|1|B5|G|4237
9F1C|1|B5|U|4238
9F1C|1|B5|U|4239
*
9F1C|1|B5|A|4253
9F1C|1|B5|C|4254
9F1C|1|B5|U|4255
9F1C|1|B5|A|4256
9F1C|1|B5|A|4257
9F1C|1|B5|U|4258
9F1C|1|B5|A|4259

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BV

Ribosomal protein L23