J3_9F1C_028
3D structure
- PDB id
- 9F1C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.78 Å
Loop
- Sequence
- AUUC*GGACCAGAG*CAUU(PSU)
- Length
- 18 nucleotides
- Bulged bases
- 9F1C|1|A2|G|992
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9F1C_028 not in the Motif Atlas
- Homologous match to J3_8P9A_074
- Geometric discrepancy: 0.1074
- The information below is about J3_8P9A_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23895.1
- Basepair signature
- cWW-cWW-cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
9F1C|1|A2|A|939
9F1C|1|A2|U|940
9F1C|1|A2|U|941
9F1C|1|A2|C|942
*
9F1C|1|A2|G|986
9F1C|1|A2|G|987
9F1C|1|A2|A|988
9F1C|1|A2|C|989
9F1C|1|A2|C|990
9F1C|1|A2|A|991
9F1C|1|A2|G|992
9F1C|1|A2|A|993
9F1C|1|A2|G|994
*
9F1C|1|A2|C|1001
9F1C|1|A2|A|1002
9F1C|1|A2|U|1003
9F1C|1|A2|U|1004
9F1C|1|A2|PSU|1005
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AE
- Small ribosomal subunit protein eS26
- Chain Aa
- 40S ribosomal protein S3a
- Chain Am
- 40S ribosomal protein S13
- Chain An
- Small ribosomal subunit protein uS11
- Chain Bp
- 60S ribosomal protein L37a
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