J3_9F1D_004

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUU(A2M)AG

Length

19 nucleotides

Bulged bases

9F1D|1|A2|A|1680

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9F1D_004 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.155

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9F1D|1|A2|C|1219
9F1D|1|A2|C|1220
9F1D|1|A2|A|1221
9F1D|1|A2|G|1222
*
9F1D|1|A2|C|1646
9F1D|1|A2|C|1647
9F1D|1|A2|A|1648
9F1D|1|A2|G|1649
9F1D|1|A2|U|1650
9F1D|1|A2|A|1651
9F1D|1|A2|A|1652
*
9F1D|1|A2|U|1674
9F1D|1|A2|G|1675
9F1D|1|A2|A|1676
9F1D|1|A2|U|1677
9F1D|1|A2|U|1678
9F1D|1|A2|A2M|1679
9F1D|1|A2|A|1680
9F1D|1|A2|G|1681

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AB

40S ribosomal protein S28

Chain Ae

Ribosomal protein S5

Chain Ap

Small ribosomal subunit protein uS9