J3_9F1D_007

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

9F1D|1|A2|G|1275, 9F1D|1|A2|G|1508, 9F1D|1|A2|U|1510

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9F1D_007 not in the Motif Atlas

Homologous match to J3_4V88_038

Geometric discrepancy: 0.1082

The information below is about J3_4V88_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75993.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

9F1D|1|A2|C|1273
9F1D|1|A2|C|1274
9F1D|1|A2|G|1275
9F1D|1|A2|G|1276
9F1D|1|A2|A|1277
9F1D|1|A2|C|1278
*
9F1D|1|A2|G|1321
9F1D|1|A2|G|1322
9F1D|1|A2|G|1323
9F1D|1|A2|U|1324
9F1D|1|A2|G|1325
*
9F1D|1|A2|U|1505
9F1D|1|A2|U|1506
9F1D|1|A2|A|1507
9F1D|1|A2|G|1508
9F1D|1|A2|A|1509
9F1D|1|A2|U|1510
9F1D|1|A2|G|1511

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AC

Ribosomal protein S27a

Chain AG

40S ribosomal protein S29

Chain Aj

S10_plectin domain-containing protein