J3_9F1D_015

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

9F1D|1|B5|A|2239

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9F1D_015 not in the Motif Atlas

Homologous match to J3_8P9A_053

Geometric discrepancy: 0.1891

The information below is about J3_8P9A_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_05025.1

Basepair signature

cWW-tSH-tWW-tHW-cWW-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9F1D|1|B5|C|2236
9F1D|1|B5|G|2237
9F1D|1|B5|A|2238
9F1D|1|B5|A|2239
9F1D|1|B5|G|2240
9F1D|1|B5|U|2241
9F1D|1|B5|G|2242
*
9F1D|1|B5|C|2648
9F1D|1|B5|A|2649
9F1D|1|B5|A|2650
*
9F1D|1|B5|U|2662
9F1D|1|B5|C|2663
9F1D|1|B5|U|2664
9F1D|1|B5|G|2665

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BR

Ribosomal protein L19

Chain Bg

60S ribosomal protein L34