J3_9F1D_019
3D structure
- PDB id
- 9F1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.26 Å
Loop
- Sequence
- GGGG*CGCUUCUGGCGCCAAG*CGAC
- Length
- 24 nucleotides
- Bulged bases
- 9F1D|1|B5|C|3844, 9F1D|1|B5|U|3845, 9F1D|1|B5|U|3846, 9F1D|1|B5|G|3849
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9F1D_019 not in the Motif Atlas
- Homologous match to J3_8P9A_060
- Geometric discrepancy: 0.3239
- The information below is about J3_8P9A_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76247.1
- Basepair signature
- cWW-F-tHH-F-tHS-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
9F1D|1|B5|G|3819
9F1D|1|B5|G|3820
9F1D|1|B5|G|3821
9F1D|1|B5|G|3822
*
9F1D|1|B5|C|3842
9F1D|1|B5|G|3843
9F1D|1|B5|C|3844
9F1D|1|B5|U|3845
9F1D|1|B5|U|3846
9F1D|1|B5|C|3847
9F1D|1|B5|U|3848
9F1D|1|B5|G|3849
9F1D|1|B5|G|3850
9F1D|1|B5|C|3851
9F1D|1|B5|G|3852
9F1D|1|B5|C|3853
9F1D|1|B5|C|3854
9F1D|1|B5|A|3855
9F1D|1|B5|A|3856
9F1D|1|B5|G|3857
*
9F1D|1|B5|C|3901
9F1D|1|B5|G|3902
9F1D|1|B5|A|3903
9F1D|1|B5|C|3904
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BA
- Large ribosomal subunit protein uL2
- Chain BG
- Large ribosomal subunit protein eL8
- Chain BZ
- 60S ribosomal protein L27
- Chain Bc
- 60S ribosomal protein L30
- Chain Bg
- 60S ribosomal protein L34
- Chain Bp
- 60S ribosomal protein L37a
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