J3_9F1D_040
3D structure
- PDB id
- 9F1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.26 Å
Loop
- Sequence
- UCGGUC*GGAGU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9F1D_040 not in the Motif Atlas
- Homologous match to J3_8P9A_055
- Geometric discrepancy: 0.1601
- The information below is about J3_8P9A_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_94309.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
9F1D|1|B5|U|2283
9F1D|1|B5|C|2284
9F1D|1|B5|G|2285
9F1D|1|B5|G|2286
9F1D|1|B5|U|2287
9F1D|1|B5|C|2288
*
9F1D|1|B5|G|2358
9F1D|1|B5|G|2359
9F1D|1|B5|A|2360
9F1D|1|B5|G|2361
9F1D|1|B5|U|2362
*
9F1D|1|B5|A|2379
9F1D|1|B5|A|2380
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain B8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BX
- Large ribosomal subunit protein uL23
- Chain Bg
- 60S ribosomal protein L34
- Chain Bk
- 60S ribosomal protein L38
- Chain Bl
- 60S ribosomal protein L39-like
Coloring options: