J3_9F58_002
3D structure
- PDB id
- 9F58 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Gcn2 dimer bound to the 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CU*AUGAAAAGAAC*GAGUGAAAAAGUACG
- Length
- 28 nucleotides
- Bulged bases
- 9F58|1|a|A|398, 9F58|1|a|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9F58_002 not in the Motif Atlas
- Geometric match to J3_8P9A_047
- Geometric discrepancy: 0.0712
- The information below is about J3_8P9A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
9F58|1|4|C|19
9F58|1|4|U|20
*
9F58|1|a|A|369
9F58|1|a|U|370
9F58|1|a|G|371
9F58|1|a|A|372
9F58|1|a|A|373
9F58|1|a|A|374
9F58|1|a|A|375
9F58|1|a|G|376
9F58|1|a|A|377
9F58|1|a|A|378
9F58|1|a|C|379
*
9F58|1|a|G|390
9F58|1|a|A|391
9F58|1|a|G|392
9F58|1|a|U|393
9F58|1|a|G|394
9F58|1|a|A|395
9F58|1|a|A|396
9F58|1|a|A|397
9F58|1|a|A|398
9F58|1|a|A|399
9F58|1|a|G|400
9F58|1|a|U|401
9F58|1|a|A|402
9F58|1|a|C|403
9F58|1|a|G|404
Current chains
- Chain 4
- 5.8S rRNA
- Chain a
- 25S rRNA
Nearby chains
- Chain 3
- 60S ribosomal protein L4-A
- Chain J
- 60S ribosomal protein L26-A
- Chain X
- 60S ribosomal protein L39
- Chain q
- 60S ribosomal protein L17-A
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