J3_9F58_008
3D structure
- PDB id
- 9F58 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Gcn2 dimer bound to the 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UC*GAGGACUGCG*CAAGGA
- Length
- 18 nucleotides
- Bulged bases
- 9F58|1|a|A|607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9F58_008 not in the Motif Atlas
- Homologous match to J3_8P9A_048
- Geometric discrepancy: 0.0624
- The information below is about J3_8P9A_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_86133.1
- Basepair signature
- cWW-cWW-F-F-F-cWS-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
9F58|1|a|U|502
9F58|1|a|C|503
*
9F58|1|a|G|588
9F58|1|a|A|589
9F58|1|a|G|590
9F58|1|a|G|591
9F58|1|a|A|592
9F58|1|a|C|593
9F58|1|a|U|594
9F58|1|a|G|595
9F58|1|a|C|596
9F58|1|a|G|597
*
9F58|1|a|C|606
9F58|1|a|A|607
9F58|1|a|A|608
9F58|1|a|G|609
9F58|1|a|G|610
9F58|1|a|A|611
Current chains
- Chain a
- 25S rRNA
Nearby chains
- Chain 3
- 60S ribosomal protein L4-A
- Chain Q
- 60S ribosomal protein L32
- Chain f
- 60S ribosomal protein L6-A
- Chain g
- 60S ribosomal protein L7-A
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