J3_9F58_010
3D structure
- PDB id
- 9F58 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Gcn2 dimer bound to the 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUAG*CGUAG*UCGAAU
- Length
- 15 nucleotides
- Bulged bases
- 9F58|1|a|A|896
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9F58_010 not in the Motif Atlas
- Homologous match to J3_8P9A_050
- Geometric discrepancy: 0.0974
- The information below is about J3_8P9A_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_21998.1
- Basepair signature
- cWW-tSH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
9F58|1|a|A|828
9F58|1|a|U|829
9F58|1|a|A|830
9F58|1|a|G|831
*
9F58|1|a|C|863
9F58|1|a|G|864
9F58|1|a|U|865
9F58|1|a|A|866
9F58|1|a|G|867
*
9F58|1|a|U|892
9F58|1|a|C|893
9F58|1|a|G|894
9F58|1|a|A|895
9F58|1|a|A|896
9F58|1|a|U|897
Current chains
- Chain a
- 25S rRNA
Nearby chains
- Chain S
- 60S ribosomal protein L34-A
- Chain c
- 60S ribosomal protein L2-A
- Chain s
- 60S ribosomal protein L19-A
Coloring options: