J3_9F58_011
3D structure
- PDB id
- 9F58 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Gcn2 dimer bound to the 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UU*AGAAG*CAUUUGA
- Length
- 14 nucleotides
- Bulged bases
- 9F58|1|a|A|1065, 9F58|1|a|U|1094, 9F58|1|a|U|1095
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9F58_011 not in the Motif Atlas
- Homologous match to J3_8P9A_051
- Geometric discrepancy: 0.2315
- The information below is about J3_8P9A_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_84137.1
- Basepair signature
- cWW-cWW-cHW-F-cSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
9F58|1|a|U|986
9F58|1|a|U|987
*
9F58|1|a|A|1062
9F58|1|a|G|1063
9F58|1|a|A|1064
9F58|1|a|A|1065
9F58|1|a|G|1066
*
9F58|1|a|C|1092
9F58|1|a|A|1093
9F58|1|a|U|1094
9F58|1|a|U|1095
9F58|1|a|U|1096
9F58|1|a|G|1097
9F58|1|a|A|1098
Current chains
- Chain a
- 25S rRNA
Nearby chains
- Chain M
- 60S ribosomal protein L29
- Chain g
- 60S ribosomal protein L7-A
- Chain u
- 60S ribosomal protein L21-A
Coloring options: