J3_9F58_016
3D structure
- PDB id
- 9F58 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Gcn2 dimer bound to the 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UCGAUC*GGAAU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9F58_016 not in the Motif Atlas
- Homologous match to J3_8CRE_015
- Geometric discrepancy: 0.0818
- The information below is about J3_8CRE_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_31965.2
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
9F58|1|a|U|1526
9F58|1|a|C|1527
9F58|1|a|G|1528
9F58|1|a|A|1529
9F58|1|a|U|1530
9F58|1|a|C|1531
*
9F58|1|a|G|1591
9F58|1|a|G|1592
9F58|1|a|A|1593
9F58|1|a|A|1594
9F58|1|a|U|1595
*
9F58|1|a|A|1612
9F58|1|a|A|1613
Current chains
- Chain a
- 25S rRNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain P
- Large ribosomal subunit protein eL41B
- Chain S
- 60S ribosomal protein L34-A
- Chain W
- 60S ribosomal protein L38
- Chain X
- 60S ribosomal protein L39
- Chain z
- 60S ribosomal protein L25
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