J3_9F58_020

3D structure

PDB id

9F58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Gcn2 dimer bound to the 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGCU*ACGUUCUAGCAUUCAAG*UGAU

Length

25 nucleotides

Bulged bases

9F58|1|a|G|2549, 9F58|1|a|U|2550, 9F58|1|a|U|2551, 9F58|1|a|C|2552, 9F58|1|a|U|2553, 9F58|1|a|A|2554, 9F58|1|a|U|2558, 9F58|1|a|U|2559, 9F58|1|a|C|2560

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9F58_020 not in the Motif Atlas

Homologous match to J3_8CRE_020

Geometric discrepancy: 0.1527

The information below is about J3_8CRE_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28639.1

Basepair signature

cWW-tSS-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

9F58|1|a|A|2529
9F58|1|a|G|2530
9F58|1|a|C|2531
9F58|1|a|U|2532
*
9F58|1|a|A|2547
9F58|1|a|C|2548
9F58|1|a|G|2549
9F58|1|a|U|2550
9F58|1|a|U|2551
9F58|1|a|C|2552
9F58|1|a|U|2553
9F58|1|a|A|2554
9F58|1|a|G|2555
9F58|1|a|C|2556
9F58|1|a|A|2557
9F58|1|a|U|2558
9F58|1|a|U|2559
9F58|1|a|C|2560
9F58|1|a|A|2561
9F58|1|a|A|2562
9F58|1|a|G|2563
*
9F58|1|a|U|2578
9F58|1|a|G|2579
9F58|1|a|A|2580
9F58|1|a|U|2581

Current chains

Chain a

25S rRNA

Nearby chains

Chain 0

60S ribosomal protein L43-A

Chain K

60S ribosomal protein L27-A

Chain N

60S ribosomal protein L30

Chain S

60S ribosomal protein L34-A

Chain c

60S ribosomal protein L2-A

Chain h

60S ribosomal protein L8-A

Chain z

60S ribosomal protein L25