J3_9F9S_004
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 9F9S|1|L1|U|343, 9F9S|1|L1|A|351, 9F9S|1|L2|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9F9S_004 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0517
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
9F9S|1|L1|C|340
9F9S|1|L1|G|341
9F9S|1|L1|A|342
9F9S|1|L1|U|343
9F9S|1|L1|A|344
9F9S|1|L1|G|345
9F9S|1|L1|C|346
9F9S|1|L1|G|347
9F9S|1|L1|A|348
9F9S|1|L1|A|349
9F9S|1|L1|C|350
9F9S|1|L1|A|351
9F9S|1|L1|A|352
9F9S|1|L1|G|353
9F9S|1|L1|U|354
9F9S|1|L1|A|355
9F9S|1|L1|C|356
*
9F9S|1|L1|G|363
9F9S|1|L1|G|364
9F9S|1|L1|A|365
9F9S|1|L1|A|366
9F9S|1|L1|A|367
9F9S|1|L1|G|368
*
9F9S|1|L2|C|21
9F9S|1|L2|U|22
9F9S|1|L2|U|23
9F9S|1|L2|G|24
Current chains
- Chain L1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)
- Chain L2
- Saccharomyces cerevisiae S288C 5.8S ribosomal RNA
Nearby chains
- Chain Lf
- 60S ribosomal protein L39
- Chain Lh
- 60S ribosomal protein L37-A
- Chain Ls
- 60S ribosomal protein L26-A
- Chain Ly
- 60S ribosomal protein L4-A
Coloring options: