J3_9F9S_005
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AUGAAAAG*CG*CU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9F9S_005 not in the Motif Atlas
- Geometric match to J3_5TBW_002
- Geometric discrepancy: 0.0704
- The information below is about J3_5TBW_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69021.1
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-F
- Number of instances in this motif group
- 7
Unit IDs
9F9S|1|L1|A|369
9F9S|1|L1|U|370
9F9S|1|L1|G|371
9F9S|1|L1|A|372
9F9S|1|L1|A|373
9F9S|1|L1|A|374
9F9S|1|L1|A|375
9F9S|1|L1|G|376
*
9F9S|1|L1|C|403
9F9S|1|L1|G|404
*
9F9S|1|L2|C|19
9F9S|1|L2|U|20
Current chains
- Chain L1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)
- Chain L2
- Saccharomyces cerevisiae S288C 5.8S ribosomal RNA
Nearby chains
- Chain Lf
- 60S ribosomal protein L39
- Chain Ls
- 60S ribosomal protein L26-A
- Chain Ly
- 60S ribosomal protein L4-A
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