J3_9F9S_006
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 9F9S|1|L1|A|398, 9F9S|1|L1|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9F9S_006 not in the Motif Atlas
- Homologous match to J3_8P9A_047
- Geometric discrepancy: 0.0685
- The information below is about J3_8P9A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
9F9S|1|L1|A|369
9F9S|1|L1|U|370
9F9S|1|L1|G|371
9F9S|1|L1|A|372
9F9S|1|L1|A|373
9F9S|1|L1|A|374
9F9S|1|L1|A|375
9F9S|1|L1|G|376
9F9S|1|L1|A|377
9F9S|1|L1|A|378
9F9S|1|L1|C|379
*
9F9S|1|L1|G|390
9F9S|1|L1|A|391
9F9S|1|L1|G|392
9F9S|1|L1|U|393
9F9S|1|L1|G|394
9F9S|1|L1|A|395
9F9S|1|L1|A|396
9F9S|1|L1|A|397
9F9S|1|L1|A|398
9F9S|1|L1|A|399
9F9S|1|L1|G|400
9F9S|1|L1|U|401
9F9S|1|L1|A|402
9F9S|1|L1|C|403
9F9S|1|L1|G|404
*
9F9S|1|L2|C|19
9F9S|1|L2|U|20
Current chains
- Chain L1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)
- Chain L2
- Saccharomyces cerevisiae S288C 5.8S ribosomal RNA
Nearby chains
- Chain LK
- 60S ribosomal protein L17-A
- Chain Lf
- 60S ribosomal protein L39
- Chain Ls
- 60S ribosomal protein L26-A
- Chain Ly
- 60S ribosomal protein L4-A
Coloring options: