J3_9F9S_014
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAAA*UGAUAAC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 9F9S|1|L1|U|1840, 9F9S|1|L1|A|1841
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9F9S_014 not in the Motif Atlas
- Homologous match to J3_8P9A_054
- Geometric discrepancy: 0.0694
- The information below is about J3_8P9A_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76012.1
- Basepair signature
- cWW-F-tHW-tHS-tWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
9F9S|1|L1|G|1488
9F9S|1|L1|A|1489
9F9S|1|L1|A|1490
9F9S|1|L1|A|1491
*
9F9S|1|L1|U|1837
9F9S|1|L1|G|1838
9F9S|1|L1|A|1839
9F9S|1|L1|U|1840
9F9S|1|L1|A|1841
9F9S|1|L1|A|1842
9F9S|1|L1|C|1843
*
9F9S|1|L1|G|1852
9F9S|1|L1|U|1853
9F9S|1|L1|C|1854
Current chains
- Chain L1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)
Nearby chains
- Chain L2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain Lf
- 60S ribosomal protein L39
- Chain Lh
- 60S ribosomal protein L37-A
- Chain Lk
- 60S ribosomal protein L34-A
Coloring options: