J3_9F9S_018

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGACG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9F9S_018 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.0673

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.1

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

9F9S|1|L1|A|1654
9F9S|1|L1|G|1655
9F9S|1|L1|A|1656
9F9S|1|L1|C|1657
9F9S|1|L1|G|1658
*
9F9S|1|L1|C|1791
9F9S|1|L1|C|1792
*
9F9S|1|L1|G|1796
9F9S|1|L1|A|1797
9F9S|1|L1|A|1798
9F9S|1|L1|A|1799
9F9S|1|L1|A|1800
9F9S|1|L1|U|1801

Current chains

Chain L1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)

Nearby chains

Chain Lb

60S ribosomal protein L43-A

Chain Lk

60S ribosomal protein L34-A

Chain Lw

60S ribosomal protein L2-A