J3_9F9S_025
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAU*AGAUG*CUG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9F9S_025 not in the Motif Atlas
- Homologous match to J3_8P9A_065
- Geometric discrepancy: 0.1422
- The information below is about J3_8P9A_065
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_81015.1
- Basepair signature
- cWW-cWW-F-cWW-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
9F9S|1|L1|C|3298
9F9S|1|L1|A|3299
9F9S|1|L1|U|3300
*
9F9S|1|L1|A|3314
9F9S|1|L1|G|3315
9F9S|1|L1|A|3316
9F9S|1|L1|U|3317
9F9S|1|L1|G|3318
*
9F9S|1|L1|C|3388
9F9S|1|L1|U|3389
9F9S|1|L1|G|3390
Current chains
- Chain L1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)
Nearby chains
- Chain LK
- 60S ribosomal protein L17-A
- Chain Ln
- 60S ribosomal protein L31-A
- Chain Lx
- 60S ribosomal protein L3
Coloring options: