J3_9F9S_028
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAAAUUUGAAA*UAAUUUGGAG*CGAAG
- Length
- 26 nucleotides
- Bulged bases
- 9F9S|1|M1|U|117, 9F9S|1|M1|G|120, 9F9S|1|M1|A|121, 9F9S|1|M1|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9F9S_028 not in the Motif Atlas
- Homologous match to J3_8C3A_001
- Geometric discrepancy: 0.0602
- The information below is about J3_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88489.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-tWH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
9F9S|1|M1|C|113
9F9S|1|M1|A|114
9F9S|1|M1|A|115
9F9S|1|M1|A|116
9F9S|1|M1|U|117
9F9S|1|M1|U|118
9F9S|1|M1|U|119
9F9S|1|M1|G|120
9F9S|1|M1|A|121
9F9S|1|M1|A|122
9F9S|1|M1|A|123
*
9F9S|1|M1|U|149
9F9S|1|M1|A|150
9F9S|1|M1|A|151
9F9S|1|M1|U|152
9F9S|1|M1|U|153
9F9S|1|M1|U|154
9F9S|1|M1|G|155
9F9S|1|M1|G|156
9F9S|1|M1|A|157
9F9S|1|M1|G|158
*
9F9S|1|M1|C|263
9F9S|1|M1|G|264
9F9S|1|M1|A|265
9F9S|1|M1|A|266
9F9S|1|M1|G|267
Current chains
- Chain M1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications
Nearby chains
- Chain MC
- 60S ribosomal protein L8-A
- Chain MG
- 60S ribosomal protein L13-A
- Chain MI
- 60S ribosomal protein L15-A
- Chain Mi
- 60S ribosomal protein L36-A
- Chain Mj
- 60S ribosomal protein L35-A
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