J3_9F9S_033

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUGAAAAGAAC*GAGUGAAAAAGUACG*CU

Length

28 nucleotides

Bulged bases

9F9S|1|M1|A|398, 9F9S|1|M1|A|402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9F9S_033 not in the Motif Atlas

Homologous match to J3_8C3A_049

Geometric discrepancy: 0.0673

The information below is about J3_8C3A_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_91149.1

Basepair signature

cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW

Number of instances in this motif group

6

Unit IDs

9F9S|1|M1|A|369
9F9S|1|M1|U|370
9F9S|1|M1|G|371
9F9S|1|M1|A|372
9F9S|1|M1|A|373
9F9S|1|M1|A|374
9F9S|1|M1|A|375
9F9S|1|M1|G|376
9F9S|1|M1|A|377
9F9S|1|M1|A|378
9F9S|1|M1|C|379
*
9F9S|1|M1|G|390
9F9S|1|M1|A|391
9F9S|1|M1|G|392
9F9S|1|M1|U|393
9F9S|1|M1|G|394
9F9S|1|M1|A|395
9F9S|1|M1|A|396
9F9S|1|M1|A|397
9F9S|1|M1|A|398
9F9S|1|M1|A|399
9F9S|1|M1|G|400
9F9S|1|M1|U|401
9F9S|1|M1|A|402
9F9S|1|M1|C|403
9F9S|1|M1|G|404
*
9F9S|1|M2|C|19
9F9S|1|M2|U|20

Current chains

Chain M1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications

Chain M2

Saccharomyces cerevisiae S288C 5.8S ribosomal RNA

Nearby chains

Chain MK

60S ribosomal protein L17-A

Chain Mf

60S ribosomal protein L39

Chain Ms

60S ribosomal protein L26-A

Chain My

60S ribosomal protein L4-A