J3_9F9S_036

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAG*CGUA(OMG)*UCGA

Length

12 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9F9S_036 not in the Motif Atlas

Homologous match to J3_8C3A_004

Geometric discrepancy: 0.1149

The information below is about J3_8C3A_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.5

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

9F9S|1|M1|U|829
9F9S|1|M1|A|830
9F9S|1|M1|G|831
*
9F9S|1|M1|C|863
9F9S|1|M1|G|864
9F9S|1|M1|U|865
9F9S|1|M1|A|866
9F9S|1|M1|OMG|867
*
9F9S|1|M1|U|892
9F9S|1|M1|C|893
9F9S|1|M1|G|894
9F9S|1|M1|A|895

Current chains

Chain M1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications

Nearby chains

Chain MM

60S ribosomal protein L19-A

Chain Mk

60S ribosomal protein L34-A

Chain Mw

60S ribosomal protein L2-A