J3_9F9S_037
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UU*AGAAG*CAUUUGA
- Length
- 14 nucleotides
- Bulged bases
- 9F9S|1|M1|A|1065, 9F9S|1|M1|U|1094, 9F9S|1|M1|U|1095
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9F9S_037 not in the Motif Atlas
- Homologous match to J3_8C3A_051
- Geometric discrepancy: 0.5616
- The information below is about J3_8C3A_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11066.3
- Basepair signature
- cWW-cSS-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
9F9S|1|M1|U|986
9F9S|1|M1|U|987
*
9F9S|1|M1|A|1062
9F9S|1|M1|G|1063
9F9S|1|M1|A|1064
9F9S|1|M1|A|1065
9F9S|1|M1|G|1066
*
9F9S|1|M1|C|1092
9F9S|1|M1|A|1093
9F9S|1|M1|U|1094
9F9S|1|M1|U|1095
9F9S|1|M1|U|1096
9F9S|1|M1|G|1097
9F9S|1|M1|A|1098
Current chains
- Chain M1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications
Nearby chains
- Chain MB
- 60S ribosomal protein L7-A
- Chain MO
- 60S ribosomal protein L21-A
- Chain Mp
- 60S ribosomal protein L29
Coloring options: