J3_9F9S_038

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

9F9S|1|M1|A|1259

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9F9S_038 not in the Motif Atlas

Homologous match to J3_8P9A_052

Geometric discrepancy: 0.2529

The information below is about J3_8P9A_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37832.1

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

5

Unit IDs

9F9S|1|M1|G|1230
9F9S|1|M1|A|1231
9F9S|1|M1|C|1232
*
9F9S|1|M1|G|1256
9F9S|1|M1|C|1257
9F9S|1|M1|U|1258
9F9S|1|M1|A|1259
9F9S|1|M1|A|1260
9F9S|1|M1|G|1261
9F9S|1|M1|G|1262
*
9F9S|1|M1|C|1277
9F9S|1|M1|A|1278
9F9S|1|M1|C|1279

Current chains

Chain M1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications

Nearby chains

Chain MP

60S ribosomal protein L12-A

Chain MQ

60S acidic ribosomal protein P0