J3_9F9S_039

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAAGUG*CAA*UCUA

Length

14 nucleotides

Bulged bases

9F9S|1|M1|A|1482

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9F9S_039 not in the Motif Atlas

Homologous match to J3_8P9A_053

Geometric discrepancy: 0.1848

The information below is about J3_8P9A_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_05025.1

Basepair signature

cWW-tSH-tWW-tHW-cWW-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9F9S|1|M1|U|1479
9F9S|1|M1|G|1480
9F9S|1|M1|A|1481
9F9S|1|M1|A|1482
9F9S|1|M1|G|1483
9F9S|1|M1|U|1484
9F9S|1|M1|G|1485
*
9F9S|1|M1|C|1857
9F9S|1|M1|A|1858
9F9S|1|M1|A|1859
*
9F9S|1|M1|U|1871
9F9S|1|M1|C|1872
9F9S|1|M1|U|1873
9F9S|1|M1|A|1874

Current chains

Chain M1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications

Nearby chains

Chain MM

60S ribosomal protein L19-A

Chain Mk

60S ribosomal protein L34-A