J3_9F9S_041
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UCGAUC*GGAAU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9F9S_041 not in the Motif Atlas
- Homologous match to J3_8P9A_055
- Geometric discrepancy: 0.0663
- The information below is about J3_8P9A_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_94309.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
9F9S|1|M1|U|1526
9F9S|1|M1|C|1527
9F9S|1|M1|G|1528
9F9S|1|M1|A|1529
9F9S|1|M1|U|1530
9F9S|1|M1|C|1531
*
9F9S|1|M1|G|1591
9F9S|1|M1|G|1592
9F9S|1|M1|A|1593
9F9S|1|M1|A|1594
9F9S|1|M1|U|1595
*
9F9S|1|M1|A|1612
9F9S|1|M1|A|1613
Current chains
- Chain M1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications
Nearby chains
- Chain M2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain Mf
- 60S ribosomal protein L39
- Chain Mg
- 60S ribosomal protein L38
- Chain Mk
- 60S ribosomal protein L34-A
- Chain Mt
- 60S ribosomal protein L25
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