J3_9F9S_055

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

9F9S|1|R1|A|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9F9S_055 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.0754

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9F9S|1|R1|A|41
9F9S|1|R1|G|42
9F9S|1|R1|A|43
9F9S|1|R1|U|44
9F9S|1|R1|U|45
9F9S|1|R1|A|46
9F9S|1|R1|A|47
9F9S|1|R1|G|48
*
9F9S|1|R1|C|431
9F9S|1|R1|G|432
9F9S|1|R1|C|433
9F9S|1|R1|G|434
9F9S|1|R1|C|435
9F9S|1|R1|A|436
9F9S|1|R1|A|437
9F9S|1|R1|A|438
9F9S|1|R1|U|439
*
9F9S|1|R1|A|464
9F9S|1|R1|G|465
9F9S|1|R1|U|466

Current chains

Chain R1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain Rj

40S ribosomal protein S9-A

Chain Rx

40S ribosomal protein S23-A