J3_9F9S_061
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUA*UUACG*CAAAG
- Length
- 13 nucleotides
- Bulged bases
- 9F9S|1|R1|A|1093
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9F9S_061 not in the Motif Atlas
- Homologous match to J3_8P9A_075
- Geometric discrepancy: 0.1031
- The information below is about J3_8P9A_075
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_94999.1
- Basepair signature
- cWW-tWW-cWW-tWW-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
9F9S|1|R1|C|1037
9F9S|1|R1|U|1038
9F9S|1|R1|A|1039
*
9F9S|1|R1|U|1079
9F9S|1|R1|U|1080
9F9S|1|R1|A|1081
9F9S|1|R1|C|1082
9F9S|1|R1|G|1083
*
9F9S|1|R1|C|1090
9F9S|1|R1|A|1091
9F9S|1|R1|A|1092
9F9S|1|R1|A|1093
9F9S|1|R1|G|1094
Current chains
- Chain R1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)
Nearby chains
- Chain RA
- Small ribosomal subunit protein eS26A
- Chain RB
- 40S ribosomal protein S27-A
- Chain Ra
- 40S ribosomal protein S0-A
- Chain Rv
- Small ribosomal subunit protein eS21A
- Chain Rw
- 40S ribosomal protein S22-A
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