J3_9F9S_066
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- 9F9S|1|R1|U|1285
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9F9S_066 not in the Motif Atlas
- Homologous match to J3_8P9A_080
- Geometric discrepancy: 0.1875
- The information below is about J3_8P9A_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17077.1
- Basepair signature
- cWW-F-F-F-F-F-F-cWW-F-cWW-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
9F9S|1|R1|U|1283
9F9S|1|R1|C|1284
9F9S|1|R1|U|1285
9F9S|1|R1|U|1286
9F9S|1|R1|A|1287
9F9S|1|R1|G|1288
*
9F9S|1|R1|C|1327
9F9S|1|R1|G|1328
9F9S|1|R1|A|1329
9F9S|1|R1|G|1330
9F9S|1|R1|A|1331
9F9S|1|R1|C|1332
*
9F9S|1|R1|G|1419
9F9S|1|R1|C|1420
9F9S|1|R1|A|1421
9F9S|1|R1|A|1422
9F9S|1|R1|U|1423
9F9S|1|R1|A|1424
Current chains
- Chain R1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)
Nearby chains
- Chain RD
- Small ribosomal subunit protein uS14A
- Chain Rc
- 40S ribosomal protein S2
- Chain Rd
- Small ribosomal subunit protein uS3
- Chain Rq
- 40S ribosomal protein S16-A
- Chain Rr
- 40S ribosomal protein S17-A
- Chain Ru
- Small ribosomal subunit protein uS10
Coloring options: