J3_9F9S_079

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9F9S_079 not in the Motif Atlas

Homologous match to J3_8C3A_038

Geometric discrepancy: 0.2015

The information below is about J3_8C3A_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.2

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9F9S|1|S1|C|1161
9F9S|1|S1|C|1162
9F9S|1|S1|A|1163
9F9S|1|S1|G|1164
*
9F9S|1|S1|C|1581
9F9S|1|S1|U|1582
9F9S|1|S1|A|1583
9F9S|1|S1|G|1584
9F9S|1|S1|U|1585
9F9S|1|S1|A|1586
9F9S|1|S1|A|1587
*
9F9S|1|S1|U|1609
9F9S|1|S1|G|1610
9F9S|1|S1|A|1611
9F9S|1|S1|U|1612
9F9S|1|S1|U|1613
9F9S|1|S1|A|1614
9F9S|1|S1|C|1615
9F9S|1|S1|G|1616

Current chains

Chain S1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain SC

Small ribosomal subunit protein eS28B

Chain Sf

40S ribosomal protein S5

Chain Sq

40S ribosomal protein S16-A