J3_9F9S_084

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9F9S_084 not in the Motif Atlas

Homologous match to J3_8C3A_085

Geometric discrepancy: 0.1135

The information below is about J3_8C3A_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.2

Basepair signature

cWW-F-F-F-F-tSS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

9F9S|1|S1|U|1293
9F9S|1|S1|G|1294
*
9F9S|1|S1|U|1303
9F9S|1|S1|G|1304
9F9S|1|S1|U|1305
9F9S|1|S1|C|1306
*
9F9S|1|S1|G|1318
9F9S|1|S1|A|1319
9F9S|1|S1|U|1320
9F9S|1|S1|A|1321
9F9S|1|S1|A|1322

Current chains

Chain S1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain Sa

40S ribosomal protein S0-A

Chain Sc

40S ribosomal protein S2

Chain Sr

40S ribosomal protein S17-B