J3_9F9S_085
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AAC*GGAC*GUUU
- Length
- 11 nucleotides
- Bulged bases
- 9F9S|1|S1|U|1413, 9F9S|1|S1|U|1414
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9F9S_085 not in the Motif Atlas
- Geometric match to J3_4V88_040
- Geometric discrepancy: 0.1318
- The information below is about J3_4V88_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82365.2
- Basepair signature
- cWW-F-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9F9S|1|S1|A|1336
9F9S|1|S1|A|1337
9F9S|1|S1|C|1338
*
9F9S|1|S1|G|1386
9F9S|1|S1|G|1387
9F9S|1|S1|A|1388
9F9S|1|S1|C|1389
*
9F9S|1|S1|G|1412
9F9S|1|S1|U|1413
9F9S|1|S1|U|1414
9F9S|1|S1|U|1415
Current chains
- Chain S1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)
Nearby chains
- Chain SD
- Small ribosomal subunit protein uS14A
- Chain SG
- Guanine nucleotide-binding protein subunit beta-like protein
- Chain Sf
- 40S ribosomal protein S5
- Chain Sq
- 40S ribosomal protein S16-A
- Chain Sr
- 40S ribosomal protein S17-B
- Chain Su
- Small ribosomal subunit protein uS10
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